MethylCoder
:: DESCRIPTION
MethylCoder is a single program that takes of bisulfite-treated reads and outputs per-base methylation data. It also includes scripts for analysis and visualization. In addition to a binary output and a SAM alignment file, the direct output of methylcoder is a text file that looks like
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::DEVELOPER
Brent Pedersen @ the Fischer Lab
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
- C Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2011 Sep 1;27(17):2435-6. doi: 10.1093/bioinformatics/btr394. Epub 2011 Jun 30.
MethylCoder: software pipeline for bisulfite-treated sequences.
Pedersen B, Hsieh TF, Ibarra C, Fischer RL.