MDScan 2004

:: DESCRIPTION

MDScan (Motif Discovery scan) discovers conserved transcription factor binding sites among upstream sequences from chromatin immune precipitation experiments (CHIP) as well as from single microarray experiments. The algorithm is strictly deterministic, not discovering local minima and always giving the globally best conserved motif. It is faster than most other algorithms and nearly as sensitive as BioProspector.

MDScan Online Version

::DEVELOPER

Xiaole Shirley Liu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• windows with Cygwin / Linux / Mac OsX
• C Complier

:: DOWNLOAD

 MDScan

:: MORE INFORMATION

Citation:

Liu XS, Brutlag DL, Liu JS.
An algorithm for finding protein-DNA binding sites with applications to chromatin immunoprecipitation microarray experiments.
Nat Biotechnol. 2002 20(8):835-9.