MaryGold 0.2
:: DESCRIPTION
MaryGold is an algorithm for finding and visualising variation within and between metagenome sequence datasets. By decomposing contig graphs into bi- and triconnected components MaryGold generates potential source-sink pairs of a bubbles that represent sequence variation.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2013 Nov 15;29(22):2826-34. doi: 10.1093/bioinformatics/btt502. Epub 2013 Sep 20.
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold.
Nijkamp JF1, Pop M, Reinders MJ, de Ridder D.