Longshot v0.43

:: DESCRIPTION

Longshot is a variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT). It takes as input an aligned BAM file and outputs a phased VCF file with variants and haplotype information. It can also genotype and phase input VCF files. It can output haplotype-separated BAM files that can be used for downstream analysis.

::DEVELOPER

Bansal Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux

:: DOWNLOAD

Longshot

:: MORE INFORMATION

Citation

Edge P, Bansal V.
Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing.
Nat Commun. 2019 Oct 11;10(1):4660. doi: 10.1038/s41467-019-12493-y. PMID: 31604920; PMCID: PMC6788989.