Knotted2Nested
:: DESCRIPTION
Knotted2Nested removes pseudoknots from a list of RNA base pairs, using different algorithms. It produces in pseudoknot-free (dot-bracket) 2D structures.
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::DEVELOPER
The Centre for Integrative Bioinformatics VU
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows/ MacOsX
- Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Sandra Smit, Kristian Rother, Jaap Heringa, and Rob Knight.
From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal.
RNA (2008) 14(3):410-416.