KisSplice 2.4.0-p1 – Local Transcriptome Assembler for SNPs and AS events

KisSplice 2.4.0-p1

:: DESCRIPTION

KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler, which enables to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has been tested on Illumina datasets of up to 300M reads.

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::DEVELOPER

KisSplice Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Mac OS X /  Linux

:: DOWNLOAD

 KisSplice

:: MORE INFORMATION

Citation

Gustavo AT Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo and Vincent Lacroix,
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data.
BMC Bioinformatics 2012, 13(Suppl 6):S5