HIT 1.0.1
:: DESCRIPTION
HIT (Haplotype Inference Technique) solves so-called genotype phasing (or haplotype inference) problem. It estimates the haplotypes of a given set of genotypes consisting of SNPs (single nucleotide polymorhisms). It does this by learning a hidden Markov model for the haplotypes using an EM type algorithm.
Advertisement
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Linux/windows/MacOsX
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
Pasi Rastas, Mikko Koivisto, Heikki Mannila, and Esko Ukkonen:
Phasing genotypes using a hidden Markov model. In: I. Mandoiu and A. Zelikovsky (eds.),
Bioinformatics Algorithms: Techniques and Applications, pp. 373-391, Wiley 2008.