HapCUT2 v1.3.1
:: DESCRIPTION
HapCUT is a max-cut based algorithm for haplotype assembly using sequence reads from the two chromosomes of an individual. It can be applied to sequence data generated from next-generation sequencing platforms. HapCUT takes as input the aligned SAM/BAM files for an individual diploid genome and the list of variants (VCF file), and outputs the phased haplotype blocks that can be assembled from the sequence reads.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/ MacOsX
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2008 Aug 15;24(16):i153-9. doi: 10.1093/bioinformatics/btn298.
HapCUT: an efficient and accurate algorithm for the haplotype assembly problem.
Bansal V, Bafna V.