GRAPeFoot 20101217 – Pairwise (Genome) Re-aligner and Phylogenetic Footprinter

GRAPeFoot 20101217

:: DESCRIPTION

GRAPeFoot simultaneously aligns two full genomes and annotates a set of conserved regions exhibiting reduced rates of insertion, deletion and substitution mutations.

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::DEVELOPER

the Satija Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 GRAPeFoot

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Sep 1;26(17):2116-20. doi: 10.1093/bioinformatics/btq360. Epub 2010 Jul 7.
Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques.
Satija R1, Hein J, Lunter GA.