GlimmerHMM 3.0.4
:: DESCRIPTION
GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM’s GHMM structure includes introns of each phase, intergenic regions, and four types of exons (initial, internal, final, and single).
::DEVELOPER
the Center for Bioinformatics and Computational Biology
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Sun Solaris / Alpha OSF1
:: DOWNLOAD
:: MORE INFORMATION
GlimmerHMM is OSI Certified Open Source Software .
Citation:
Majoros, W.H., Pertea, M., and Salzberg, S.L. TigrScan and GlimmerHMM: two open-source ab initio eukaryotic gene-finders Bioinformatics 20 2878-2879.