GETM 20100519 – Gene Expression Text Miner

GETM 20100519

:: DESCRIPTION

GETM is a tool which is capable of extracting information about the expression of genes from biomedical literature. Using the data extracted by GETM, it is possible to get an overview of the cell types that are discussed in context with gene expression of a particular gene , and vice versa.

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::DEVELOPER

the Bergman lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
  • Java

:: DOWNLOAD

 GETM

:: MORE INFORMATION

Citation

Gerner M., Nenadic, G. and Bergman, C. M. (2010)
An exploration of mining gene expression mentions and their anatomical locations from biomedical text.
BioNLP ’10 Proceedings of the 2010 Workshop on Biomedical Natural Language Processing.