Gene-environment interactions
:: DESCRIPTION
Gene-environment interactions is an R code that perform a GWAS analysis of gene-environnement interactions for imputed SNPs and non-imputed SNPs. Instead of using PLINK to perform the logistic regressions or the generalized linear model, we used the PLINK’s R plug-in function to do it for the non-imputed SNPs. For the imputed SNPs, we completely exceeded PLINK and used R to do the statistical tests. For both imputed and non-imputed SNPs, we used BASH scritping to dispatch the analysis on SGE and then gathers the results after the analysis.
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::DEVELOPER
Marie-Pierre Dubé’s Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows / MacOsX
- R package
:: DOWNLOAD
Gene-environment interactions
:: MORE INFORMATION