gCluster
:: DESCRIPTION
The gCluster algorithm is a general clustering method that predicts clusters of any biological word or combination of them, relying only on the DNA sequence and the statistical significance. When using CG as word, gCluster works similarly to CpGcluster, our method to predict CpG islands. More broadly, gCluster has much in common with wordCluster but uses an improved distance model.
::DEVELOPER
The group of computational genomics and bioinformatics at Granada University (Spain)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- VirtualBox.
:: DOWNLOAD
:: MORE INFORMATION
Citation
Gómez-Martín C., Lebrón R., Oliver J.L., Hackenberg M.
Prediction of CpG Islands as an Intrinsic Clustering Property Found in Many Eukaryotic DNA Sequences and Its Relation to DNA Methylation.
Methods Mol Biol. 2018;1766:31-47. doi: 10.1007/978-1-4939-7768-0_3.