DeepMP – Detect DNA modifications in Nanopore Sequencing data

DeepMP

:: DESCRIPTION

DeepMP is a convolutional neural network (CNN)-based model that takes information from Nanopore signals and basecalling errors to detect whether a read is methylated or not.

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::DEVELOPER

DeepMP team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • ¬†Linux
  • Python

:: DOWNLOAD

DeepMP

:: MORE INFORMATION

Citation:

Bonet J, Chen M, Dabad M, Heath S, Gonzalez-Perez A, Lopez-Bigas N, Lagergren J.
DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.
Bioinformatics. 2021 Oct 28:btab745. doi: 10.1093/bioinformatics/btab745. Epub ahead of print. PMID: 34718417.

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