CUSHAW3 3.0.3 – Sensitive and Accurate Gapped Short-read Alignment

CUSHAW3 3.0.3

:: DESCRIPTION

CUSHAW3 (the third distribution of CUSHAW software package for next-generation sequencing read alignment) is an open-source parallelized, sensitive and accurate short-read aligner.

Advertisement

::DEVELOPER

Liu, Yongchao

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • CUDA toolkits and SDK 2.0 or higher.

:: DOWNLOAD

 CUSHAW3

:: MORE INFORMATION

Citation:

Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC+.
González-Domínguez J, Liu Y, Schmidt B.
PLoS One. 2016 Jan 5;11(1):e0145490. doi: 10.1371/journal.pone.0145490.

PLoS One. 2014 Jan 22;9(1):e86869. doi: 10.1371/journal.pone.0086869. eCollection 2014.
CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding.
Liu Y1, Popp B2, Schmidt B1.