Cola a1 – Modular and Configurable Optimal Sequence Aligner

Cola a1

:: DESCRIPTION

Cola consists of an efficient implementation of a collection of sequence alignment algorithms, extending the Smith-Waterman and Smith-Waterman-Gap-Affine methods by the ability to apply a scoring function that is an arbitrary function of the size of consecutive nucleotide matches.

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::DEVELOPER

Grabherr Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • C++ Compiler

:: DOWNLOAD

 Cola

:: MORE INFORMATION

Citation

Source Code Biol Med. 2014 Jun 9;9:12. doi: 10.1186/1751-0473-9-12. eCollection 2014.
Modular and configurable optimal sequence alignment software: Cola.
Zamani N1, Sundström G1, Höppner MP1, Grabherr MG