Clean_tree 2 – High-resolution Male Lineage Classification

Clean_tree 2

:: DESCRIPTION

Clean tree is a tool intended to help interpret phylogenetic SNP genotypes obtained from NGS-data, furthermore it uses a quality control system to ensure the accuracy of the obtained results.

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::DEVELOPER

Dept Genetic Identification ErasmusMC Rotterdam

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • R

:: DOWNLOAD

  Clean tree

:: MORE INFORMATION

Citation

Ralf, A., van Oven, M., Zhong, K., Kayser, M.
Simultaneous analysis of hundreds of Y-chromosomal SNPs for high-resolution paternal lineage classification using targeted semiconductor sequencing.
Hum Mutat. 2015 36: 151-9. PubMed: 25338970

Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively parallel sequencing.
Ralf A, Oven M, Montiel González D, de Knijff P, van der Beek K, Wootton S, Lagacé R, Kayser M.
Forensic Science International: Genetics , 2019