Cistematic 3.0

:: DESCRIPTION

Cistematic is a Python package with a rich set of API’s that simplify the collection and analysis of candidate cis-regulatory elements from a number of different motif-finding programs such as Meme, and cisGreedy (built-in). Cistematic assesses the significance of each motif by comparing it to its prevalence genome-wide.

::DEVELOPER

the Wold Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

• Linux/MacOsx/WIndows with Cygwin
• Python

:: DOWNLOAD

  Cistematic

:: MORE INFORMATION

Citation:

Genome Res. 2006 Oct;16(10):1208-21. Epub 2006 Sep 8.
Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire.
Mortazavi A, Leeper Thompson EC, Garcia ST, Myers RM, Wold B.