ChIA-PET 1.0
:: DESCRIPTION
ChIA-PET Tool is a software package for automatic processing of ChIA-PET (Chromatin Interaction Analysis using Paired-End Tag sequencing )sequence data, including linker filtering, mapping tags to reference genomes, identifying protein binding sites and chromatin interactions, and displaying the results on a graphical genome browser
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:: DEVELOPER
the Genome Institute of Singapore
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Apach
- MySQL
- PHP
- Java
- R package
- C Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
ChIA-PET analysis of transcriptional chromatin interactions.
Zhang J, Poh HM, Peh SQ, Sia YY, Li G, Mulawadi FH, Goh Y, Fullwood MJ, Sung WK, Ruan X, Ruan Y.
Methods. 2012 Nov;58(3):289-99.