DNA Master 5.22.1
:: DESCRIPTION
DNA Master is a freeware DNA sequence editor and analysis package.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
N/A
Category: DNA / Genome Analysis
goldMINER 2.0.27 – Use CDD to Automate Sequence Annotation
goldMINER 2.0.27
:: DESCRIPTION
goldMINER automates local and remote searches against pFAM and CDD (Conserved-Domain Database, which integrates pFAM, SMART and COG, etc.) databases searches to annotate sequences such as expressed sequence tags (ESTs). It is the first software package to use the power of CDD at NCBI to automate sequence annotation.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
N/A
NSA 3.3 – Nucleotide Sequence Analyzer
NSA 3.3
:: DESCRIPTION
NSA (Nucleotide Sequence Analyzer) may be used to handled nucleotidic sequences in order to compute a number of characteristics (such as haplotypes, composition, sites, haplogroups, distances, …..) and to create a variety of export files usable with other available softwares.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
If you download and use this software please register to be informed for new release and modifications.
DNA Counter 1.0.2 – Caculate Proportions of A,C G, T ,CG, AT in DNA Sequence
DNA Counter 1.0.2
:: DESCRIPTION
DNA Counter is a freeware tool that shows the proportions of A,C G, T nucleotides and CG, AT nucleotides in a DNA sequence.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
N/A
MB 6.84 – DNA Analysis Program
MB 6.84
:: DESCRIPTION
MB ( MolecularBiological DNA Analysis) is a free Windows DNA analysis program.MB is a relative small and easy to use program. It includes the most common features for the analysis of DNA and protein sequences. These are: restriction sites search, restriction mapping, amino protein analysis, multiple sequence alignment, dot plot, molecular weight calculation and ORF search.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
GenomeComp 1.3 – Whole Genome Compare & Visulization Tool
GenomeComp 1.3
:: DESCRIPTION
GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.
It can be easily used to compare, parsing and visualize large genomic sequences, especially closely related genomes such as inter-species or inter-strains. In addition, it can also show other sequence features like repeat sequence distributions in one whole-genome DNA sequence by comparing the genome to itself.
::DEVELOPER
Chinese National Human Genome Center
:: SCREENSHOTS
:: REQUIREMENTS
- Windows / Linux / Solaris / IRIX
:: DOWNLOAD
:: MORE INFORMATION
Citation
Yang, J., Wang, J.H., Yao, Z.J., Jin, Q., Shen, Y., Chen, R.S., 2003.
GenomeComp: a visualization tool for microbial genome comparison.
J. Microbiol. Meth. 54, 423-426.
GenescanView 1.2 – Visualize Genescan Files
GenescanView 1.2
:: DESCRIPTION
GenescanView is the free software for the visualization of files generated with automatic ABI sequencers.GenescanView allows to visualize genescan files (.fsa format from ABI PRISM sequencers) and to view the exact peak size.
::DEVELOPER
at CRIBI (University of Padova) by Davide Campagna
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
N/A
GenomePixelizer 2003.10.1 – Genome Visualization Tool
GenomePixelizer 2003.10.1
:: DESCRIPTION
GenomePixelizer is a visualization tool that generates custom images of the physical or genetic positions of specified sets of genes in whole genomes or parts of genomes. Multiple sets of genes can be shown simultaneously with user-defined characteristics displayed. It allows the analysis of duplication events within and between species based on sequence similarities. GenomePixelizer may be useful in the detection of duplication events in genomes, tracking the “footprints” of evolution, as well as displaying the genetic maps and other aspects of comparative genetics.
GenomePixelizer may be considered a drawing tool that generates custom images of genomes out of the given set of genes. Each element on the picture has a physical address defined by coordinates (pixels), hence the name “GenomePixelizer”.
::DEVELOPER
GenomePixelizer Team, University of California
:: SCREENSHOTS
:: REQUIREMENTS
- Windows / Mac / Linux
- Tcl/Tk
:: DOWNLOAD
:: MORE INFORMATION
Citation
A. Kozik, E. Kochetkova and R. Michelmore
GenomePixelizer—a visualization program for comparative genomics within and between species
Bioinformatics (2002) 18 (2): 335-336.
DNA for Windows 2.51 – DNA Sequence Editing & Analysis Program
DNA for Windows 2.51
:: DESCRIPTION
DNA for Windows is a compact, easy to use DNA analysis program, ideal for small-scale sequencing projects. It is particularly suited to working with chromatogram files from ABI machines, and is one of the few programs able to edit as well as view these files. The program has powerful DNA translation and restriction enzyme analysis facilities, and works with external programs to produce multiple alignments and contigs with ease.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- Windows
:: DOWNLOAD
:: MORE INFORMATION
If you find the program useful, don’t forget to register – you will receive the latest version which already has a number of significant improvements over the evaluation version.
VariScan 2.0.3 – Analysis of DNA Sequence Polymorphisms at the Whole Genome-scale
VariScan 2.0.3
:: DESCRIPTION
VariScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome-scale. The software, i) allows estimating a number of population genetic parameters; ii) conducts the analysis by using the sliding window or a wavelet transform-based methods to capture relevant information from DNA polymorphism data; iii) permits the visualization of the results by commonly used genome browsers.
::DEVELOPER
Molecular Evolutionary Genetics Group
:: SCREENSHOTS
:: REQUIREMENTS
- Windows / Mac OsX/ Linux
- C++ Complier
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hutter, S., Vilella, A, J. and Rozas, J. (2006).
Genome-wide DNA polymorphism analyses using VariScan.
BMC Bioinformatics 7: 409.