SBML2SMW 1.0 – Extract Celldesigner Model to Semantic Mediawiki

SBML2SMW 1.0

:: DESCRIPTION

SBML2SMW allows extracting Celldesigner model information, storing this information to a Semantic Mediawiki server and context-sensitive restoring and integration of this information in a Celldesigner model. The application consists of two parts: The Celldesigner-plugin itself which directly communicates with the Celldesigner and so has access to the Celldesigner models and the Translationserver which receives the extracted information and translates it into Semantic Mediawiki syntax and stores it there.

::DEVELOPER

fluid Operations AG

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

SBML2SMW

:: MORE INFORMATION

Code license GNU Lesser General Public License

SBML2SMW: bridging System Biology with semantic web technologies for biomedical knowledge acquisition and hypothesis elicitation
Tobias Mathäß, Peter Haase, Hiroaki Kitano, Luca Toldo. 2nd Workshop of Ontologies in Biomedicine and Life Sciences, OBML2010, Mannheim, Germany.

Payao Uploader 1.0 – CellDesigner Plugin to Upload Model to Payao

Payao Uploader 1.0

:: DESCRIPTION

Payao Uploader is to allow the user to upload CellDesigner pathway models to Payao system – a web-based community curation platform

::DEVELOPER

Systems Biology Institute

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Payao Uploader ; Manual

:: MORE INFORMATION

Compatibility: Built for CellDesigner 4.1.

Merge Models 1.03 – CellDesigner Plugin to Merge Models

Merge Models 1.03

:: DESCRIPTION

Merge Models is a CellDesigner plugin. The purpose of Merge Models is to allow the user to merge different biological pathway models and build new pathway maps. It also provides the ability to analysis two or more models for merging, to identify the duplicate species and highlight them on the merged model map.

::DEVELOPER

Systems Biology Institute

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

Merge Models ; Manual

:: MORE INFORMATION

Compatibility: Built for CellDesigner 4.1.

Import Notes 1.1 – CellDesigner Plugin, Import Notes Data from CSV File

Import Notes 1.1

:: DESCRIPTION

CellDesigner allow developers to supply  Plugins to extend the function of CellDesigner.

Import Notes is used  to import notes data from CSV file.

::DEVELOPER

N/A

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

Import Notes

:: MORE INFORMATION

Work in CellDesigner 4.0  and above.