CAGEd-oPOSSUM 1.0
:: DESCRIPTION
CAGEd-oPOSSUM is a web-based tool used to detect the over-representation of transcription factor binding sites (TFBS) in regions containing transcription start sites (TSS) derived from Cap Analysis of Gene Expression (CAGE) peaks. It applies the methods of over-representation analysis from our oPOSSUM tool to CAGE derived TSSs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Arenillas DJ, Forrest AR, Kawaji H, Lassmann T; FANTOM Consortium, Wasserman WW, Mathelier A.
CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.
Bioinformatics. 2016 Sep 15;32(18):2858-60. doi: 10.1093/bioinformatics/btw337. Epub 2016 Jun 9. PMID: 27334471; PMCID: PMC5018375.