BMix
:: DESCRIPTION
BMix is a toolbox for analysing PAR-CLIP data and detecting T-to-C substitutions induced following RNA-protein cross-linking.
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::DEVELOPER
the Computational Biology Group (CBG)
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Matlab (at least R2013)
- samtools (http://www.htslib.org/)
- awk (http://www.gnu.org/software/gawk/manual/gawk.html)
- bedtools (http://bedtools.readthedocs.org/en/latest/)
:: DOWNLOAD
:: MORE INFORMATION
Citation:
BMix: Probabilistic modeling of occurring substitutions in PAR-CLIP data.
Golumbeanu M, Mohammadi P, Beerenwinkel N.
Bioinformatics. 2015 Sep 5. pii: btv520.