AlphaFamImpute 0.0.1
:: DESCRIPTION
AlphaFamImpute is a genotype calling, phasing, and imputation algorithm for large full-sib families in diploid plants and animals which supports individuals genotyped with SNP array or GBS data. The approach draws heavily on single and multi-locus iterative peeling (as in AlphaPeel). It also has been inspired by work outside our group such as hs-phase (Ferdosi et al. 2014), and magicimpute (Zheng et al. 2018).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/MacOsX
:: DOWNLOAD
:: MORE INFORMATION
Citation
Whalen A, Gorjanc G, Hickey JM.
AlphaFamImpute: high-accuracy imputation in full-sib families from genotype-by-sequencing data.
Bioinformatics. 2020 Aug 1;36(15):4369-4371. doi: 10.1093/bioinformatics/btaa499. PMID: 32467963; PMCID: PMC7520044.