ALIDOT 2.0.6 – Detect Conserved Secondary Structure Motifs

ALIDOT 2.0.6

:: DESCRIPTION

ALIDOT (ALIgned DOT-plots) detects conserved secondary structure elements in relatively small sets of RNAs by combining multiple sequence alignments and secondary structure predictions. Both a (good) sequence alignment and predicted secondary structure predictions for each sequence in the alignment must be provided as inputs. alidot works either with predicted mfe structures, or with base pairing probability matrices.

Advertisement

The program alidot and the associated perl scripts are part of the Vienna RNA Package.

::DEVELOPER

Ivo Hofacker

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

ALIDOT

:: MORE INFORMATION

Citation

Automatic Detection of Conserved Base Pairing Patterns in RNA Virus Genomes
Ivo L. Hofacker and Peter F. Stadler
Comp & Chem., 23, 401-414 (1999)

Leave a Reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.