HMS 0.1
:: DESCRIPTION
HMS (hybrid motif sampler) implements a novel computational algorithm specifically designed for transcription factor binding sites (TFBS) motif discovery using ChIP-Seq data. HMS combines stochastic sampling with determinstic greedy search to achieve rapid and accurate motif pattern identification. In addition, it can identify non-ignorable inter-position dependency inside TFBS motifs.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows / MacOsX
- R Package
:: DOWNLOAD
:: MORE INFORMATION
Citation
Hu M, Yu J, Taylor JM, Chinnaiyan AM, Qin ZS.
On the detection and refinement of transcription factor binding sites using ChIP-Seq data.
Nucleic Acids Res. 2010 Apr;38(7):2154-67. Epub 2010 Jan 6.