ChromSDE 2.2
:: DESCRIPTION
ChromSDE is a software which applies semi-definite programming techniques to find the best structure fitting the observed data and uses golden section search to find the correct parameter for converting the contact frequency to spatial distance.
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::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/ Windows/ MacOsX
- Java
:: DOWNLOAD
:: MORE INFORMATION
Citation
“Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data“,
ZZ.Zhang, GL.Li, KC.Toh,and W.Sung,
RECOMB 2013: 317-332