ChromSDE 2.2 – Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data

ChromSDE 2.2

:: DESCRIPTION

ChromSDE is a software which applies semi-definite programming techniques to find the best structure fitting the observed data and uses golden section search to find the correct parameter for converting the contact frequency to spatial distance.

::DEVELOPER

Sung Wing Kin, Ken

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

  ChromSDE

:: MORE INFORMATION

Citation

“Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data“,
ZZ.Zhang, GL.Li, KC.Toh,and W.Sung,
RECOMB 2013: 317-332