ChromSDE 2.2 – Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data

ChromSDE 2.2

:: DESCRIPTION

ChromSDE is a software which applies semi-definite programming techniques to find the best structure fitting the observed data and uses golden section search to find the correct parameter for converting the contact frequency to spatial distance.

Advertisement

::DEVELOPER

Sung Wing Kin, Ken

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

  ChromSDE

:: MORE INFORMATION

Citation

“Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data“,
ZZ.Zhang, GL.Li, KC.Toh,and W.Sung,
RECOMB 2013: 317-332