:: DESCRIPTION
Hypergeny is an online tool for viewing large phylogenetic trees. We hope to help researchers visualise and understand large phylogenetic trees by offering a hyperbolic tree browser.
::DEVELOPER
Bioinformatics & Systems Biology
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Volume Browser created at the Pittsburgh Supercomputing Center (PSC) enables you to view large three dimensional images (datasets) over the internet. You can interact with with the image to view from any angle, or slice through it to see inside. You can also trace and label sections of the image. The PSC Volume Browser is a breathrough in 3D imaging because it allows you to view uncompressed datasets from a desktop computer that wouldn’t have the capability view such data on its own.
::DEVELOPER
National Resource for Biomedical Supercomputing
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
TreeJuxtaposer lets you interactively view a single tree, or compare two or more trees. The software handles all kinds of trees, including phylogenetic trees, taxonomic trees, consensus trees, dendrograms from cluster hierarchies, and others. Uses nested parentheses (Newick/New Hampshire) data format. Guaranteed visibility of marked regions provides visual landmarks. Structural differences are automatically marked, and the marked clades highlight corresponding nodes on the trees through the use of a generalization of the Robinson-Foulds distance metric. Responsive drawing for even very large trees with advanced graphics techniques.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Tamara Munzner, Francois Guimbretiere, Serdar Tasiran, Li Zhang, and Yunhong Zhou.
TreeJuxtaposer: Scalable Tree Comparison using Focus+Context with Guaranteed Visibility
Proc. SIGGRAPH 2003, published as ACM Transactions on Graphics 22(3), pages 453–462
:: DESCRIPTION
TreeEdit is an easy to use application for organizing, viewing and manipulating sets of phylogenetic trees. TreeEdit is intended as a tool for preparing sets of trees for use in phylogenetics packages such as PAUP.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
TreeViewJ is an open source, cross-platform tool for viewing and analyzing phylogenetic trees. It provides the user with the capability to rename, color, and adjust the width of nodes and branches to produce publication-quality images. If dates are available for taxa, the software can map them onto a timeline, and sort the tree in ascending or descending date order.
::DEVELOPER
Matthew W Peterson and Marc E Colosimo
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Peterson, M.W. and M.E. Colosimo,
TreeViewJ: an application for viewing and analyzing phylogenetic trees.
Source Code Biol Med, 2007. 2(1): p. 7.
