SCENIC 1.1.2 / pySCENIC 0.11.2
:: DESCRIPTION
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows/ Linux/ MacOsX
- R / Python
:: DOWNLOAD
:: MORE INFORMATION
Citation
Aibar S, et al.
SCENIC: single-cell regulatory network inference and clustering.
Nat Methods. 2017 Nov;14(11):1083-1086. doi: 10.1038/nmeth.4463. Epub 2017 Oct 9. PMID: 28991892; PMCID: PMC5937676.
Van de Sande B,et al.
A scalable SCENIC workflow for single-cell gene regulatory network analysis.
Nat Protoc. 2020 Jul;15(7):2247-2276. doi: 10.1038/s41596-020-0336-2. Epub 2020 Jun 19. PMID: 32561888.