SimTree 1.2.3 – Compute Similarity between RNA Secondary Structure

SimTree 1.2.3

:: DESCRIPTION

SimTree is an online tool for computing the similarity between RNA secondary structures.

::DEVELOPER

Eran Eden , Izhar Wallach (izharw@keddem.com) ,Zohar Yakhini @ Laboratory of Computational Biology , Technion

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • Java
  • Web Server

:: DOWNLOAD

 SimTree

:: MORE INFORMATION

AveRNA – Ensemble-based Prediction of RNA Secondary Structures.

AveRNA

:: DESCRIPTION

The AveRNA program predicts secondary structures by combining structures obtained from 11 other prediction programs.

AveRNA Online Version

::DEVELOPER

BETA LAB – University of British Columbia

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 AveRNA

:: MORE INFORMATION

Citation:

Nima Aghaeepour and Holger Hoos:
Ensemble-based Prediction of RNA Secondary Structures.
RNA, submitted for publication, May 2011.

Migal 2.2 – Compare RNA Secondary Structure

Migal 2.2

:: DESCRIPTION

MiGaL (Multiple Graph Layer) is a software used to compare RNA secondary structure.

MiGaL Online Version

::DEVELOPER

Julien Allali

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Migal

:: MORE INFORMATION

Citation

Julien Allali , Marie-France Sagot
A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison
Software—Practice & Experience Volume 38 Issue 8, July 2008