partiFold / partiFold-Align
:: DESCRIPTION
partiFold is a software to investigate the folding landscape of TMBs (Transmembrane Beta-barrel Proteins).
partiFold-Align is the first algorithm for simultaneous alignment and consensus folding of unaligned protein sequences; the algorithm’s complexity is polynomial in time and space.
::DEVELOPER
Jerome Waldispühl , Bonnie Berger
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Mac OsX
- WebServer
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Simultaneous alignment and folding of protein sequences.
Waldispühl J, O’Donnell CW, Will S, Devadas S, Backofen R, Berger B.
J Comput Biol. 2014 Jul;21(7):477-91. doi: 10.1089/cmb.2013.0163
J. Waldispühl, C.W. O’Donnell, S. Devadas, P. Clote and B. Berger.
Modeling Ensembles of Transmembrane β-barrel Proteins
PROTEINS: Structure, Function and Bioinformatics, published online 14 Nov. 2007. doi:10.1002/prot.21788