:: DESCRIPTION
supraHex is an open-source R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Biochem Biophys Res Commun. 2014 Jan 3;443(1):285-9. doi: 10.1016/j.bbrc.2013.11.103. Epub 2013 Dec 2.
supraHex: an R/Bioconductor package for tabular omics data analysis using a supra-hexagonal map.
Fang H, Gough J
:: DESCRIPTION
dnet is an open-source R package for omics data integrative analysis in terms of network, evolution and ontology
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Genome Med. 2014 Aug 26;6(8):64. doi: 10.1186/s13073-014-0064-8.
The ‘dnet’ approach promotes emerging research on cancer patient survival.
Fang H, Gough J
:: DESCRIPTION
KeyPathwayMiner is not limited to analyses of single omics data sets, e.g. gene expression, but is able to directly combine several different omics data types.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.
Alcaraz N, Pauling J, Batra R, Barbosa E, Junge A, Christensen AG, Azevedo V, Ditzel HJ, Baumbach J.
BMC Syst Biol. 2014 Aug 19;8:99. doi: 10.1186/s12918-014-0099-x.
:: DESCRIPTION
CARMO is a web-based platform providing comprehensive annotations for multi-omics data, including transcriptomic data sets, epi-genomic modification sites, SNPs from genome re-sequencing, and the large gene lists derived from these omics studies.
::DEVELOPER
Plant Bioinformatics and Functional Epigenomics Group, SIPPE, SIBS, CAS
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
NO
:: MORE INFORMATION
Citation
CARMO: a comprehensive annotation platform for functional exploration of rice multi-omics data.
Wang J, Qi M, Liu J, Zhang Y.
Plant J. 2015 Jul;83(2):359-74. doi: 10.1111/tpj.12894.
