Tag: microbiome

Mockrobiota – Public Resource for Microbiome Bioinformatics Benchmarking

Mockrobiota

:: DESCRIPTION

Mockrobiota is a public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.

::DEVELOPER

Caporaso Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows /MacOsX
  • Python

:: DOWNLOAD

Mockrobiota

:: MORE INFORMATION

Citation

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking.
Bokulich NA, Rideout JR, Mercurio WG, Shiffer A, Wolfe B, Maurice CF, Dutton RJ, Turnbaugh PJ, Knight R, Caporaso JG.
mSystems. 2016 Oct 18;1(5). pii: e00062-16

Qiita v0.2.0 – Microbiome Meta-analysis

Qiita v0.2.0

:: DESCRIPTION

Qiita (canonically pronounced cheetah) is the QIIME database effort to enable rapid analysis of microbial ecology datasets. The Qiita repository is responsible for defining the data model and the Python API for interacting with a Qiita database.

::DEVELOPER

Knight Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

Qiita

:: MORE INFORMATION

Citation

Qiita: rapid, web-enabled microbiome meta-analysis.
Gonzalez A, et al.
Nat Methods. 2018 Oct;15(10):796-798. doi: 10.1038/s41592-018-0141-9

Colony B 2.5.1 – mobile Game for analysing Microbiome data

Colony B 2.5.1

:: DESCRIPTION

Colony B is a fast paced puzzle game specifically designed for phones and tablets. In Colony B, you are in charge of growing a colony of bacteria. Bacteria accumulate to survive. Your goal is to identify clusters of bacteria that are accumulating. Theses clusters generate points based on their density, and allow you in turn to grow your colony.

::DEVELOPER

Computer Science and Biology at McGill

:: SCREENSHOTS

:: REQUIREMENTS

  • iOS/ Android

:: DOWNLOAD

Colony B for iPhone / for Android phone

:: MORE INFORMATION