:: DESCRIPTION
NGSanalyzer is a suit of tools for identifying SNV (single nucleotide variations) and indels (insertions and deletions) from short read sequence data.
::DEVELOPER
Laboratory for Medical Science Mathematics
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
SNP2CAPS facilitates the computational conversion of SNPs into CAPS markers. A simple algorithm involves the screening of multiply-aligned sequences for restriction sites followed by a selection pipeline that allows the deduction of CAPS candidates by the identification of putative alternative restriction sites.
::DEVELOPER
Thomas Thiel at the IPK-Gatersleben
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
T. Thiel, R. Kota, I. Grosse, N. Stein, and A. Graner.
SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development.
Nucleic Acids Research, 32(1):e5, 2004.
:: DESCRIPTION
MoDIL (Mixture of Distributions Indel Locator) is a novel method for finding medium sized indels from high throughput sequencing datasets.
::DEVELOPER
the Computational Biology Labat the University of Toronto’s Department of Computer Science.
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Seunghak Lee, Fereydoun Hormozdiari, Can Alkan & Michael Brudno
MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions
Nature Methods 6, 473 – 474 (2009)
