:: DESCRIPTION
miRNAkey is a software package designed to be used as a base-station for the analysis of miRNA deep sequencing data.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Roy Ronen; Ido Gan; Shira Modai;Alona Sukacheov; Gideon Dror; Eran Halperin; Noam Shomron.
miRNAkey: a software for microRNA Deep Sequencing analysis.
Bioinformatics 2010; doi: 10.1093/bioinformatics/btq493
:: DESCRIPTION
ANDES (ANalyses of DEep sequencing) is a software library and a suite of applications, written in Perl and R, for the statistical ANalyses of DEep Sequencing. The fundamental data structure underlying ANDES is the position profile, which contains the nucleotide distributions for each genomic position resultant from a multiple sequence alignment (MSA). Tools include the root mean square deviation (RMSD) plot, which allows for the visual comparison of multiple samples on a position-by-position basis, and the computation of base conversion frequencies (transition/transversion rates), variation (Shannon entropy), inter-sample clustering and visualization (dendrogram and multidimensional scaling (MDS) plot), threshold-driven consensus sequence generation and polymorphism detection, and the estimation of empirically determined sequencing quality values.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Kelvin Li etc. ANDES: Statistical tools for the ANalyses of DEep Sequencing. BMC Research Notes 2010 3:199.
