Tag: Analyze

CMEIAS Color Segmentation 1.0 – Segment & Analyze Foreground Objects within Complex Images

CMEIAS Color Segmentation 1.0

:: DESCRIPTION

CMEIAS Color Segmentation is a free, improved computing technology designed to alleviate the laborious task of segmenting foreground objects of interest (e.g., microbes) from background in complex digital micrographs, as commonly encountered when preparing digital images of microbial populations and communities in environmental samples for quantitative image analysis.

::DEVELOPER

CMEIAS Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

CMEIAS Color Segmentation

:: MORE INFORMATION

Citation

Colin A. Gross, Chandan K. Reddy and Frank B. Dazzo. 2009.
CMEIAS color segmentation: an improved computing technology to process color images for quantitative microbial ecology studies at single-cell resolution.
Microbial Ecology (2010) 59: 400-414. DOI:10.1007/s00248-009-9616-7.

TreeViewJ 1.1.2 – View & Analyze Phylogenetic Trees

TreeViewJ 1.1.2

:: DESCRIPTION

TreeViewJ is an open source, cross-platform tool for viewing and analyzing phylogenetic trees.  It provides the user with the capability to rename, color, and adjust the width of nodes and branches to produce publication-quality images.  If dates are available for taxa, the software can map them onto a timeline, and sort the tree in ascending or descending date order.

::DEVELOPER

Matthew W Peterson and Marc E Colosimo

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Java

:: DOWNLOAD

TreeViewJ

:: MORE INFORMATION

Citation

Peterson, M.W. and M.E. Colosimo,
TreeViewJ: an application for viewing and analyzing phylogenetic trees.
Source Code Biol Med, 2007. 2(1): p. 7.