SCENIC 1.1.2 / pySCENIC 0.11.1- Single-cell Regulatory Network Inference and Clustering

SCENIC 1.1.2 / pySCENIC 0.11.1

:: DESCRIPTION

SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

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pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

::DEVELOPER

aertslab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • R / Python

:: DOWNLOAD

SCENIC / pySCENIC

:: MORE INFORMATION

Citation

Aibar S, et al.
SCENIC: single-cell regulatory network inference and clustering.
Nat Methods. 2017 Nov;14(11):1083-1086. doi: 10.1038/nmeth.4463. Epub 2017 Oct 9. PMID: 28991892; PMCID: PMC5937676.

Van de Sande B,et al.
A scalable SCENIC workflow for single-cell gene regulatory network analysis.
Nat Protoc. 2020 Jul;15(7):2247-2276. doi: 10.1038/s41596-020-0336-2. Epub 2020 Jun 19. PMID: 32561888.

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