NASTIseq 1.0
:: DESCRIPTION
NASTIseq is a software package for the identiffcation of cis-Natural Antisense Transcripts (cis-NAT) using strand speciffc RNA-seq data. The method is based on the observation that strand speciffc RNAseq sometimes generate reads from the unexpected strand. We designed a probabilistic model which estimate the strand speciffcity and account for it using a binomial model.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux / Windows
- R
- DESeq
- ROCR
:: DOWNLOAD
:: MORE INFORMATION
Citation
Song Li, Louisa Liberman, Neelanjan Mukherjee, Philip N. Benfey, Uwe Ohler. (2013).
Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.
Genome Res. 2013 Oct;23(10):1730-9. doi: 10.1101/gr.149310.112.