Harvest 1.1.2
:: DESCRIPTION
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes. Harvest includes: Parsnp, a fast core-genome multi-aligner, Gingr, a dynamic visual platform, and harvest-tools, providing both a reference compressed binary archive and format conversion tools.
::DEVELOPER
The University of Maryland Center for Bioinformatics and Computational Biology (CBCB)
:: SCREENSHOTS
:: REQUIREMENTS
- Linux/ MacOsX
- R
- BioConductor
:: DOWNLOAD
:: MORE INFORMATION
Citation
Treangen TJ, Ondov BD, Koren S, Phillippy AM.
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
Genome Biol. 2014;15(11):524. doi: 10.1186/s13059-014-0524-x. PMID: 25410596; PMCID: PMC4262987.