:: DESCRIPTION
Imago provides a browsable interface for collections of microscopy images, similar to iPhoto or Picasa. It also can be used to annotate images, create image mosaics, and identify and count cells.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
PAST (PDB Archival Snapshot Toolkit) allows users to create date-stamped mirrors of the current PDB repository, and it maintains all previous archives using an efficient storage mechanism. Although the PDB development team now provides archival copies of the PDB for selected dates, the archives are infrequent (updated yearly) and do not provide an efficient means of storing the redundant data. PAST is based on an efficient indexing technique similar to the ones used by Picasa and iTunes. We only store one physical copy for each unique file. PAST archival snapshots precisely mirror the directory structure and files in the PDB, but all files in the snapshot directory are replaced by links to a minimal set of data to prevent wasteful use of space. PAST has been tested and deployed in our lab to create weekly PDB snapshots corresponding to ASTEROIDS releases.
::DEVELOPER
Degui Zhi and John-Marc Chandonia
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
:: DESCRIPTION
Meta-All is a software that allows to store and access information about metabolic pathways, including reaction kinetics, detailed locations, environmental circumstances and taxonomic information.
::DEVELOPER
Life Science Informatics – Prof. Dr. Falk Schreiber
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
S. Weise, I. Grosse, C. Klukas, D. Koschuetzki, U. Scholz, F. Schreiber and B.H. Junker.
Meta-All: a system for managing metabolic pathway information.
BMC Bioinformatics, 7:e465, 2006.
:: DESCRIPTION
CoCo (ChIP-on-Chip online) is a computational tool that allows the user to search, visualise and store different data associated with gene expression.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2007 Mar 15;23(6):771-3. Epub 2007 Jan 17.
CoCo: a web application to display, store and curate ChIP-on-chip data integrated with diverse types of gene expression data.
Girardot C, Sklyar O, Grosz S, Huber W, Furlong EE.
:: DESCRIPTION
QPCR is a versatile web-based Java application that allows to store, manage, and analyze data from quantitative real-time polymerase chain reaction (qPCR) experiments. It comprises a parser to automatically import generated data from qPCR devices and includes a variety of analysis methods to calculate Ct and amplification efficiency values. The analysis pipeline includes technical and biological replicate handling, incorporates sample or gene specific efficiency, normalization using single or multiple housekeeping genes, inter-run calibration, and fold change calculation. Moreover, the application supports proper error propagation throughout all analysis steps and allows conducting statistical tests on sample classes. Results can be visualized in highly customizable charts and exported for further investigation.
::DEVELOPER
Genomics & Bioinformatics Graz, Graz University of Technology
:: SCREENSHOTS
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Pabinger S, Thallinger GG, Snajder R, Eichhorn H, Rader R, Trajanoski Z.
QPCR: Application for real-time PCR data management and analysis.
BMC Bioinformatics 2009, 10:268
:: DESCRIPTION
qPCR-DAMS is a database management system implemented on MS Access 2003 and Visual Basic. It is designed to analyze, manage, and store relative and absolute quantitative real-time PCR data. The system consists of 5 blocks: three blocks (Gene, Plate, and Experiment) for inputting, storing and describing raw data, and two blocks (View data and Process Data) for checking, evaluating, and processing data. Users are allowed to choose among four basic outputs: (I) Ratio relative quantification, (II) Absolute level, (III) Normalized absolute expression, and (IV) Ratio absolute quantification, and two advanced options: (V) Multiple reference relative quantification and (VI) Multiple references absolute quantification, within single software package. The coefficient of variation is monitored at each step during data processing and the accuracy is further improved by an easy data tracking and display system. In summary, qPCR-DAMS is a handy novel tool for real-time PCR users.
::DEVELOPER
Nili Jin , Keyu He and Lin Liu
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nili Jin , Keyu He and Lin Liu
qPCR-DAMS: a database tool to analyze, manage, and store both relative and absolute quantitative real-time PCR data
Physiological Genomics 25:525-527 (2006)
