Tag: Search

ACD/Column Selector – Search & Choose Columns

ACD/Column Selector

:: DESCRIPTION

ACD/Column Selector  application from ACD/Labs helps chromatographers select suitable alternatives to a desired chromatographic column, closely matched for retention and selectivity, based on the Tanaka chromatographic parameters.

::DEVELOPER

Advanced Chemistry Development

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Server

:: DOWNLOAD

NO

:: MORE INFORMATION

Ref.

Euerby, MR; Petersson, P.
Chromatographic classification and comparison of commercially available reversed-phase liquid chromatographic columns using principal component analysis.
J. Chromatogr. A, 994: 13–36, 2003.

IScan 1.0.0 – Search for Insertion Sequences (ISs), their Inverted Repeats (IRs), and associated Direct Repeats (DRs)

IScan 1.0.0

:: DESCRIPTION

IScan  is a package to identify insertion sequences and similar transposable elements, their inverted repeats, and the direct target repeats they generate in entire genomes.

::DEVELOPER

Andreas Wagner Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 IScan

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2007;35(16):5284-93. Epub 2007 Aug 7.
A survey of bacterial insertion sequences using IScan.
Wagner A, Lewis C, Bichsel M.

BiblioSpec 2.0 – Creat and Search MS/MS Peptide Spectrum Libraries

BiblioSpec 2.0

:: DESCRIPTION

BiblioSpec enables the identification of peptides from tandem mass spectra by searching against a database of previously identified spectra.

::DEVELOPER

MacCoss Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

 BiblioSpec

:: MORE INFORMATION

Citation

Using BiblioSpec for creating and searching tandem MS peptide libraries.
Frewen B, MacCoss MJ.
Curr Protoc Bioinformatics. 2007 Dec;Chapter 13:Unit 13.7.

SNPHunter 2.22 – Search Alignment File for SNPs

SNPHunter 2.22

:: DESCRIPTION

SNPHunter: Searches an alignment file (e.g. AceParser output) for SNPs using multiple parameters and filters (works with AssemblyFilter) for quality, homopolymer runs, and alternative splicing/assembly error. Options to include Blast annotation and ORF information for codon position and synonomous/nonsynonymous amino acid changes and to generate population specific output.

::DEVELOPER

J. Cris Vera

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 SNPHunter

:: MORE INFORMATION

Bio-SeCo – Bioinformatics Search Computing Application

Bio-SeCo

:: DESCRIPTION

Bio-SeCo allows exploring and integrating data from external resources (e.g. NCBI and WU BLAST, Array Express, …).

::DEVELOPER

Bio-SeCo team

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014;15 Suppl 1:S3. doi: 10.1186/1471-2105-15-S1-S3. Epub 2014 Jan 10.
Explorative search of distributed bio-data to answer complex biomedical questions.
Masseroli M, Picozzi M, Ghisalberti G, Ceri S.

LCR-eXXXplorer – Search, Visualize and Share data for low Complexity Regions in Protein sequence

LCR-eXXXplorer

:: DESCRIPTION

LCR-eXXXplorer is a web-service designed to assist biologists in displaying, searching and sharing Low Complexity Regions (LCRs) contained within protein sequences.

::DEVELOPER

LCR-eXXXplorer team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences.
Kirmitzoglou I, Promponas VJ.
Bioinformatics. 2015 Feb 20. pii: btv115.

miRNAminer – microRNA Homology Search

miRNAminer

:: DESCRIPTION

miRNAminer is a web-based tool used for homologous miRNA gene search in several species. Given a search query, candidate homologs are identified using BLAST search and then tested for their known miRNA properties, such as secondary structure, energy, alignment and conservation, in order to assess their fidelity.

::DEVELOPER

Adam Kiezun

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2008 Jan 23;9:39. doi: 10.1186/1471-2105-9-39.
miRNAminer: a tool for homologous microRNA gene search.
Artzi S1, Kiezun A, Shomron N.

imago 1.0.104 – Store, Organize, Search, and Analyze Scientific Images

imago 1.0.104

:: DESCRIPTION

Imago provides a browsable interface for collections of microscopy images, similar to iPhoto or Picasa. It also can be used to annotate images, create image mosaics, and identify and count cells.

::DEVELOPER

Mayachitra Inc.

:: SCREENSHOTS

imago

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 imago

:: MORE INFORMATION

SequenceServer 2.0.0.rc8 – Set up a Local BLAST Web Server to Search & Share Sequence data

SequenceServer 2.0.0.rc8

:: DESCRIPTION

SequenceServer lets you rapidly set up a BLAST+ server with an intuitive user interface for use locally or over the web.

::DEVELOPER

Wurm Lab

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 SequenceServer

:: MORE INFORMATION

Citation

Sequenceserver: a modern graphical user interface for custom BLAST databases
Anurag Priyam, Ben J Woodcroft, Vivek Rai, Alekhya Munagala, Ismail Moghul, Filip Ter, Mark Anthony Gibbins, HongKee Moon, Guy Leonard, Wolfgang Rumpf, Yannick Wurm
doi: http://dx.doi.org/10.1101/033142

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