bamstats 0.4
:: DESCRIPTION
bamstats is a program to extract various information from BAM alignmnet files.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Haskell Platform
:: DOWNLOAD
:: MORE INFORMATION
Tag: Information
PreMeta – Exchange of Information between four software packages for Meta-analysis
PreMeta
:: DESCRIPTION
PreMeta is a software program written in C++ that is designed to facilitate the exchange of information between four software packages for meta-analysis of rare-variant associations: MASS, RAREMETAL, MetaSKAT, and seqMeta.
::DEVELOPER
:: SCREENSHOTS
N/A
::REQUIREMENTS
- Linux
:: DOWNLOAD
:: MORE INFORMATION
Citation
Tang ZZ, Bunn P, Tao R, Liu Z, Lin DY.
PreMeta: a tool to facilitate meta-analysis of rare-variant associations.
BMC Genomics. 2017 Feb 14;18(1):160. doi: 10.1186/s12864-017-3573-1. PMID: 28196472; PMCID: PMC5310051.
BioLegend Flow Cytometry Application 1.6 – Information about Flow Cytometers and Fluorochromes
BioLegend Flow Cytometry Application 1.6
:: DESCRIPTION
BioLegend Flow Cytometry Application provides you with important information about your Flow Cytometers and Fluorochromes. Now you can use BioLegend’s Spectra Analyzer quickly and conveniently in the palm of your hand. We included an Antibody Usage Calculator and Timer to help with your experiments (Timer does not work in the background and will pause upon exiting the application).
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- iPhone / iPad
:: DOWNLOAD
:: MORE INFORMATION
BRISK – Biology-Related Information Storage Kit
BRISK
:: DESCRIPTION
BRISK is a package of several web-based data management tools that provide a cohesive data integration and management platform. It was specifically designed to provide the architecture necessary to promote collaboration and expedite data sharing between scientists.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Apache
- MySQL
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Bioinformatics. 2011 Sep 1;27(17):2422-5. doi: 10.1093/bioinformatics/btr389. Epub 2011 Jun 27.
BRISK–research-oriented storage kit for biology-related data.
Tan A, Tripp B, Daley D.
GWIPS-viz – Genome Wide Information on Protein Synthesis
GWIPS-viz
:: DESCRIPTION
GWIPS-viz aims to provide on-line tools for the analysis and visualization of ribo-seq data obtained with the ribosome profiling technique
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Web browser
:: DOWNLOAD
:: MORE INFORMATION
Citation
Proteomics. 2015 Mar 3. doi: 10.1002/pmic.201400603.
GWIPS-viz as a tool for exploring ribosome profiling evidence supporting the synthesis of alternative proteoforms.
Michel AM1, Ahern AM, Donohue CA, Baranov PV.
Uniprot DAT File Parser 1.1.5674 – Read Uniprot (IPI) .Dat file and Parse out the information for each entry
Uniprot DAT File Parser 1.1.5674
:: DESCRIPTION
The Uniprot DAT File Parser can read a Uniprot (IPI) .Dat file and parse out the information for each entry, creating a tab delimited text file. Uniprot .Dat files can be obtained from EBI’s FTP site.
::DEVELOPER
Biological MS Data and Software Distribution Center , Pacific Northwest National Laboratory
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Windows
- Microsoft NET Framework 3.5
:: DOWNLOAD
:: MORE INFORMATION
MetaCrop 2.0 – Browsing and Working with Information from the MetaCrop database
MetaCrop 2.0
:: DESCRIPTION
MetaCrop is an Add-on to enable browsing of the content of the handcurated Metacrop database. Users can directly load hand-layouted pathway maps or metabolic network models to use for browsing, pathway exploration, data-mapping and analysis or use them for metabolic modelling. The user can also filter the pathway for species specific information, which will be visually highlighted.
::DEVELOPER
Chair for Life Science Informatics
:: SCREENSHOTS
:: REQUIREMENTS
- Web browser
:: DOWNLOAD
:: MORE INFORMATION
Citation
Nucleic Acids Res. 2012 Jan;40(Database issue):D1173-7. Epub 2011 Nov 15.
MetaCrop 2.0: managing and exploring information about crop plant metabolism.
Schreiber F, Colmsee C, Czauderna T, Grafahrend-Belau E, Hartmann A, Junker A, Junker BH, Klapperstück M, Scholz U, Weise S.
Human Genome 1.0.4 – Obtain information about a known Gene
Human Genome 1.0.4
:: DESCRIPTION
The Human Genome App is designed so that a person can obtain information about a known gene or discover relationships between genes and diseases, syndromes or traits.
::DEVELOPER
:: SCREENSHOTS
:: REQUIREMENTS
- iPad
:: DOWNLOAD
:: MORE INFORMATION
MitoSeek 1.3 – Extract Mitochondrial Genome information from Exome Sequencing data
MitoSeek 1.3
:: DESCRIPTION
MitoSeek is an open-source software tool to reliably and easily extract mitochondrial genome information from exome sequencing data. MitoSeek evaluates mitochondrial genome alignment quality, estimates relative mitochondrial copy numbers, and detects heteroplasmy, somatic mutation, and structural variance of the mitochondrial genome.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- Perl
:: DOWNLOAD
:: MORE INFORMATION
Citation
Yan Guo, Jiang Li, Yu Shyr, David C. Samuels.
MitoSeek: Extracting Mitochondria Information and Performing High Throughput Mitochondria Sequencing Analysis.
Bioinformatics (2013) 29 (9): 1210-1211
N-score – Predict Nucleosome Positions from DNA Sequence information
N-score
:: DESCRIPTION
N-score is a wavelet analysis based model for predicting nucleosome positions from DNA sequence information.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux/Windows/MacOsX
- Python/Matlab
:: DOWNLOAD
:: MORE INFORMATION
Citation
Genomic sequence is highly predictive of local nucleosome depletion.
Yuan GC, Liu JS.
PLoS Comput Biol. 2008 Jan;4(1):e13