:: DESCRIPTION
EBD (Express Beta Diversity) is a software package for calculating measures of taxon- or phylogenetic-based beta diversity.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Parks, D.H. and Beiko, R.G.
Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities.
ISME J. 2013 Jan;7(1):173-83
:: DESCRIPTION
EP-sim is a software of multiple-resolution alignment-free measure based on Entropic Profiles
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
On the comparison of regulatory sequences with multiple resolution Entropic Profiles.
Comin M, Antonello M.
BMC Bioinformatics. 2016 Mar 18;17(1):130. doi: 10.1186/s12859-016-0980-2.
:: DESCRIPTION
PSAR (probabilistic sampling-based alignment reliability) is a software to the alignments in the UCSC Genome Browser to measure the reliability of alignments in different types of regions, such as coding exons and conserved non-coding regions, and use it to guide cross-species conservation study.
PSAR-Align is a software of improving multiple sequence alignment using probabilistic sampling
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Bioinformatics. 2014 Apr 1;30(7):1010-2. doi: 10.1093/bioinformatics/btt636. Epub 2013 Nov 12.
PSAR-align: improving multiple sequence alignment using probabilistic sampling.
Kim J1, Ma J.
Nucleic Acids Res. 2011 Aug;39(15):6359-68. Epub 2011 May 16.
PSAR: measuring multiple sequence alignment reliability by probabilistic sampling.
Kim J, Ma J.
:: DESCRIPTION
AVF-filter is designed for the removal of noisy/low-variance expression profiles and non-periodic profiles (optional, for cell culture data).
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Goltsev Y, Papatsenko D.
“Time warping of evolutionary distant temporal gene expression data based on noise suppression”
BMC Bioinformatics. 2009 Oct 26;10:353.
