UniCon3D 1.0 – United-residue Protein Folding via Stepwise, Probabilistic Sampling

UniCon3D 1.0

:: DESCRIPTION

UniCon3D is a software for de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling.

::DEVELOPER

Dr. Jianlin Cheng’

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 UniCon3D

:: MORE INFORMATION

Citation

UniCon3D: de novo protein structure prediction using united-residue conformational search via stepwise, probabilistic sampling.
Bhattacharya D, Cao R, Cheng J.
Bioinformatics. 2016 Jun 3. pii: btw316

PSAR / PSAR-Align – Measuring Multiple Sequence Alignment Reliability by Probabilistic Sampling

PSAR / PSAR-Align

:: DESCRIPTION

PSAR (probabilistic sampling-based alignment reliability) is a software to the alignments in the UCSC Genome Browser to measure the reliability of alignments in different types of regions, such as coding exons and conserved non-coding regions, and use it to guide cross-species conservation study.

PSAR-Align is a software of improving multiple sequence alignment using probabilistic sampling

::DEVELOPER

Ma Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • GCC

:: DOWNLOAD

PSAR ; PSAR-Align

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Apr 1;30(7):1010-2. doi: 10.1093/bioinformatics/btt636. Epub 2013 Nov 12.
PSAR-align: improving multiple sequence alignment using probabilistic sampling.
Kim J1, Ma J.

Nucleic Acids Res. 2011 Aug;39(15):6359-68. Epub 2011 May 16.
PSAR: measuring multiple sequence alignment reliability by probabilistic sampling.
Kim J, Ma J.

Exit mobile version