FastEP – Fast Computation of Entropic Profiles for the Detection of Conservation in Genomes

FastEP

:: DESCRIPTION

FastEP (Fast Entropic Profiler) is a linear time linear space algorithm suitable for large genomes and for the discovery of motifs with unbounded length.

::DEVELOPER

Matteo Comin

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 FastEP

:: MORE INFORMATION

Citation

M. Antonello, M. Comin,
Fast Computation of Entropic Profiles for the Detection of Conservation in Genomes“,
Proceedings of Pattern Recognition in Bioinformatics 2013,
Lecture Notes in BIoinformatics (LNBI) 2013, 7986, pp. 277–288.

EP-sim – Multiple-resolution Alignment-free Measure based on Entropic Profiles

EP-sim

:: DESCRIPTION

EP-sim is a software of multiple-resolution alignment-free measure based on Entropic Profiles

::DEVELOPER

Matteo Comin

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 EP-sim

:: MORE INFORMATION

Citation

On the comparison of regulatory sequences with multiple resolution Entropic Profiles.
Comin M, Antonello M.
BMC Bioinformatics. 2016 Mar 18;17(1):130. doi: 10.1186/s12859-016-0980-2.

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