PDBest (PDB Enhanced Structures Toolkit) is a freely available platform for manipulating, filtering and normalizing biomolecules in Protein Data Bank (PDB) and mmCIF structure files.
::DEVELOPER
PDBest team , the Bioinformatics and System Laboratory (LBS) at Universidade Federal de Minas Gerais, Brazil.
The dbtoolkit application enables easy manipulation of fasta sequence database in a user-friendly environment. Sequence databases can be merged, shuffled, truncated, etc… Furthermore, for more experienced users, the Java API provides a well documented and easy-to-use environment for customized fasta database manipulations.
mozCellML is a Mozilla based CellML tool. It can be used to edit boundary conditions, integrate models(using a Runge-Kutta method), and fit parameters to models(using Levenberg-Marquardt).