gff2aplot 2.0 – Visualizing Pair-wise Alignments with Annotated Axes from GFF files.

gff2aplot 2.0

:: DESCRIPTION

gff2aplot is a program to visualize the alignment of two sequences together with their annotations. Input for the program consists of single or multiple files in GFF-format which specify the alignment coordinates and annotation features of both sequences. Output is in PostScript format of any size. The features to be displayed are highly customizable to meet user specific needs. The program serves to generate print-quality images for comparative genome sequence analysis.

::DEVELOPER

gff2aplot Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 gff2aplot 

:: MORE INFORMATION

Citation

Abril, J.F., Guigó, R. and Wiehe, T.
gff2aplot: Plotting sequence comparisons.”
Bioinformatics, 19(18):2477-2479 (2003).

gffcompare v0.12.2 – Comparing, Annotating, Merging and Tracking Transcripts in GFF files

gffcompare v0.12.2

:: DESCRIPTION

gffcompare is a program for comparing, annotating, merging and tracking transcripts in GFF(General Feature Format) files

::DEVELOPER

The Center for Computational Biology at Johns Hopkins University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX

:: DOWNLOAD

 gffcompare

:: MORE INFORMATION

Citation

Pertea G, Pertea M.
GFF Utilities: GffRead and GffCompare.
F1000Res. 2020 Apr 28;9:ISCB Comm J-304. doi: 10.12688/f1000research.23297.2. PMID: 32489650; PMCID: PMC7222033.

gffread v0.12.2 – Filtering, Converting and Manipulating GFF files

gffread v0.12.2

:: DESCRIPTION

The program gffread can be used to validate, filter, convert and perform various other operations on GFF (General Feature Format) files.

::DEVELOPER

The Center for Computational Biology at Johns Hopkins University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX

:: DOWNLOAD

 gffread

:: MORE INFORMATION

Citation

Pertea G, Pertea M.
GFF Utilities: GffRead and GffCompare.
F1000Res. 2020 Apr 28;9:ISCB Comm J-304. doi: 10.12688/f1000research.23297.2. PMID: 32489650; PMCID: PMC7222033.

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