TPpred 3.0 – Detection of Mitochondrial-targeting Signals in Proteins

TPpred 3.0

:: DESCRIPTION

TPpred is a web server for MITOCHONDRIAL targeting peptides prediction in proteins. TPpred is optimized for the prediction of cleavage sites of mitochondrial targeting peptides.

::DEVELOPER

Bologna Biocomputing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python
BioPython
EMBOSS

:: DOWNLOAD

TPpred

:: MORE INFORMATION

Citation

TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in Eukaryotic proteins.
Savojardo C, Martelli PL, Fariselli P, Casadio R.
Bioinformatics. 2015 Jun 16. pii: btv367

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.
Savojardo C, Martelli PL, Fariselli P, Casadio R.
Bioinformatics. 2014 Jun 27. pii: btu411.

TpPred – Prediction and Classification of Transport proteins

TpPred

:: DESCRIPTION

TpPred is an Artificial Neural Network (NN) based tool for prediction and classification of transport protein into its classes and sub-classes. It performs a 3 layer classification for transport proteins. The 1st layer of the prediction engine is for identifying a query protein as transport protein or not; the 2nd layer for the main functional class; and the 3rd layer for the sub-functional class.