TPpred 3.0 – Detection of Mitochondrial-targeting Signals in Proteins

TPpred 3.0

:: DESCRIPTION

TPpred is a web server for MITOCHONDRIAL targeting peptides prediction in proteins. TPpred is optimized for the prediction of cleavage sites of mitochondrial targeting peptides.

::DEVELOPER

Bologna Biocomputing Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Linux
Python
BioPython
EMBOSS

:: DOWNLOAD

TPpred

:: MORE INFORMATION

Citation

TPpred3 detects and discriminates mitochondrial and chloroplastic targeting peptides in Eukaryotic proteins.
Savojardo C, Martelli PL, Fariselli P, Casadio R.
Bioinformatics. 2015 Jun 16. pii: btv367

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.
Savojardo C, Martelli PL, Fariselli P, Casadio R.
Bioinformatics. 2014 Jun 27. pii: btu411.

MINTbase V2 – Exploration of Mitochondrial and Nuclear tRNA Fragments

MINTbase V2

:: DESCRIPTION

MINTbase: a web-based framework that serves the dual-purpose of being a content repository for tRFs and a tool for the interactive exploration of these newly discovered molecules.

::DEVELOPER

the Computational Medicine Center at the Sidney Kimmel Medical College of Thomas Jefferson University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Windows/Linux/MacOsX
Java

:: DOWNLOAD

MINTplates

:: MORE INFORMATION

Citation

Pliatsika, V, Loher, P, Telonis, AG, Rigoutsos, I.
MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments
Bioinformatics. 2016; In press.

MARSpred – Prediction of Mitochondrial Aminoacyl tRNA Synthetases

MARSpred

:: DESCRIPTION

MARSpred is a prediction method for discrimination between Mitochondrial-AARSs and Cytosolic-AARSs.

::DEVELOPER

MARSpred team.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

Web Browser

:: DOWNLOAD

:: MORE INFORMATION

Citation

Amino Acids. 2012 May;42(5):1703-13. doi: 10.1007/s00726-011-0872-8. Epub 2011 Mar 13.
Predicting sub-cellular localization of tRNA synthetases from their primary structures.
Panwar B1, Raghava GP.